Add mumemto recipe (#53000)

* added mumemto v1.1.0 recipe * Update recipes/mumemto/meta.yaml Co-authored-by: Martin Grigorov <[email protected]> * Update recipes/mumemto/meta.yaml Co-authored-by: Martin Grigorov <[email protected]> * moved to build.sh * changed release hash --------- Co-authored-by: Martin Grigorov <[email protected]>
bioconda · Jan 2, 2025 · 35ad93b · 35ad93b
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diff --git a/recipes/mumemto/build.sh b/recipes/mumemto/build.sh
@@ -0,0 +1,19 @@
+#!/bin/bash
+
+mkdir build
+cd build
+cmake ..
+make -j"${CPU_COUNT}" install
+cd ..
+
+mkdir -p $PREFIX/bin
+mkdir -p $SP_DIR/mumemto
+mkdir -p $PREFIX/share/licenses/$PKG_NAME
+
+cp build/mumemto $PREFIX/bin/mumemto_exec
+cp build/bin/newscanNT.x $PREFIX/bin/
+cp mumemto/*.py $SP_DIR/mumemto/
+cp mumemto/mumemto $PREFIX/bin/
+cp LICENSE $PREFIX/share/licenses/$PKG_NAME/
+chmod +x $PREFIX/bin/mumemto
+touch $SP_DIR/mumemto/__init__.py 
diff --git a/recipes/mumemto/meta.yaml b/recipes/mumemto/meta.yaml
@@ -0,0 +1,53 @@
+{% set name = "mumemto" %}
+{% set version = "1.1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/vikshiv/mumemto/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 189591f01677c806982bdb63b87d15431afbaf32f226ca706d6b02847bac8ae2
+
+build:
+  number: 0
+  pkg_format: '.conda'
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - cmake
+    - make
+  host:
+    - python
+  run:
+    - python
+    - matplotlib-base
+    - numpy
+    - tqdm
+    - numba
+    - plotly
+
+test:
+  commands:
+    - mumemto --help
+    - mumemto viz --help
+    - mumemto coverage --help
+    - mumemto inversions --help
+  imports:
+    - mumemto.utils
+
+about:
+  home: https://github.com/vikshiv/mumemto
+  summary: Finding maximal unique matches across pangenomes
+  description: |
+    Mumemto is a tool for finding a variety of matches across collections of sequences like a pangenome.
+    It includes a visualization tool for visualizing pangenome synteny.
+  license: GPL-3.0-only
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - vikshiv