Skip to content

Commit

Permalink
Add taranys tool - Version 3.0.1 (#53030)
Browse files Browse the repository at this point in the history
  • Loading branch information
saramonzon authored Jan 3, 2025
1 parent 84837c3 commit b323812
Show file tree
Hide file tree
Showing 3 changed files with 62 additions and 44 deletions.
5 changes: 0 additions & 5 deletions recipes/taranis/build.sh

This file was deleted.

39 changes: 0 additions & 39 deletions recipes/taranis/meta.yaml

This file was deleted.

62 changes: 62 additions & 0 deletions recipes/taranys/meta.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,62 @@
{% set name = "taranys" %}
{% set version = "3.0.1" %}

package:
name: {{ name|lower }}
version: {{ version }}

source:
url: https://github.com/BU-ISCIII/taranys/archive/{{ version }}.tar.gz
sha256: 89824baa50f8b5ecf2e20b15ee841391401b250a29db720bff5c025c806042c1

build:
entry_points:
- taranys = taranys.__main__:run_taranys
noarch: python
script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
number: 0
run_exports:
- {{ pin_subpackage(name, max_pin="x") }}

requirements:
host:
- python >=3.10
- setuptools
- setuptools-scm
- pip
run:
- python >=3.10
- poetry >=1.7.1
- prokka >=1.14
- blast >=2.9
- mash >=2
- prodigal >=2.6.3
- mafft >=7.505
- igraph >=0.9.8
- rich >=13.4.1
- click >=8.1.3
- leidenalg >=0.9.1
- questionary >=1.10.0
- bio >=1.6.0
- scikit-learn >=1.2.0
- plotly >=5.11.0
- python-kaleido >=0.2.1
- six >=1.16.0

test:
imports:
- taranys
commands:
- taranys --help
requires:
- pip

about:
summary: cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
license: GPL-3.0-or-later
license_file: LICENSE
home: https://github.com/BU-ISCIII/taranys

extra:
recipe-maintainers:
- saramonzon

0 comments on commit b323812

Please sign in to comment.