adding RDEVAL

recipes/rdeval/build.sh

@@ -0,0 +1,13 @@
+#!/usr/bin/env bash
+
+set -o errexit
+set -o nounset
+set -o xtrace
+
+cd "$SRC_DIR"
+
+export CXXFLAGS="$CXXFLAGS -O3 -I$PREFIX/include"
+export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
+
+make -j"${CPU_COUNT}"
+install -v -m 0755 build/bin/rdeval "$PREFIX/bin/rdeval"

recipes/rdeval/foo.patch

@@ -0,0 +1,30 @@
+diff --git a/Makefile b/Makefile2
+index 5823f28..41cdab3 100644
+--- a/Makefile
++++ b/Makefile2
+@@ -1,5 +1,5 @@
+-CXX ?= g++
+-INCLUDE_DIR = -I./include -I./gfalibs/include
++CXX ?= ${CXX}
++INCLUDE_DIR = -I./include -I./gfalibs/include -I${PREFIX}/include
+ WARNINGS = -Wall -Wextra
+
+ CXXFLAGS = -g -std=gnu++14 -O3 $(INCLUDE_DIR) $(WARNINGS)
+@@ -12,7 +12,7 @@ SOURCE = src
+ INCLUDE = include
+ BINDIR := $(BUILD)/.o
+
+-LDFLAGS := -pthread
++LDFLAGS := -pthread -L${PREFIX}/lib
+ LIBS = -lz
+
+ OBJS := main input reads
+@@ -27,7 +27,7 @@ head: $(BINS) gfalibs | $(BUILD)
+ all: head validate regenerate
+
+ $(BINDIR)%: $(SOURCE)/%.cpp $(INCLUDE)/%.h | $(BINDIR)
+-	$(CXX) $(CXXFLAGS) $(LDFLAGS) -c $(SOURCE)/$(notdir $@).cpp -o $@
++	$(CXX) $(CXXFLAGS) $(LDFLAGS) -c $(SOURCE)/$(notdir $@).cpp -o $@ $(LIBS)
+
+ .PHONY: gfalibs
+ gfalibs:

recipes/rdeval/libs.patch

@@ -0,0 +1,13 @@
+diff --git a/Makefile b/Makefile
+index 5823f28..19d1be3 100644
+--- a/Makefile
++++ b/Makefile
+@@ -13,7 +13,7 @@ INCLUDE = include
+ BINDIR := $(BUILD)/.o
+
+ LDFLAGS := -pthread
+-LIBS = -lz
++LIBS := -lz
+
+ OBJS := main input reads
+ BINS := $(addprefix $(BINDIR)/, $(OBJS))

recipes/rdeval/meta.yaml

@@ -0,0 +1,39 @@
+{% set name = "rdeval" %}
+{% set version = "0.0.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/vgl-hub/{{ name }}/releases/download/v{{ version }}/{{ name }}.v{{ version }}-with_submodules.zip
+  sha256: 56c2f4d7d2c22b27d1b380dc41b81cc77a2d97c792a69b9360bed9e0027bac4d
+  patches:
+    - zlib.patch
+    - libs.patch
+    - foo.patch
+
+build: 
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - make
+  host:
+    - zlib
+
+test:
+  commands:
+    - rdeval --help
+
+about:
+  home: https://github.com/vgl-hub/{{ name }}
+  summary: A general purpose, multithreaded read analysis and manipulation tool.
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  license_url: https://github.com/vgl-hub/{{ name }}/blob/main/LICENSE
+  dev_url: https://github.com/vgl-hub/{{ name }}

recipes/rdeval/zlib.patch

@@ -0,0 +1,52 @@
+diff --git a/gfalibs/include/output.h b/gfalibs/include/output.h
+index aabbec0..20f0dc1 100644
+--- a/gfalibs/include/output.h
++++ b/gfalibs/include/output.h
+@@ -12,7 +12,7 @@
+ #include "gfa-lines.h"
+ #include "gfa.h"
+
+-#include "zlib.h"
++#include <zlib.h>
+ #include "zstream/zstream_common.hpp"
+ #include "zstream/ozstream.hpp"
+ #include "zstream/ozstream_impl.hpp"
+diff --git a/gfalibs/include/stream-obj.h b/gfalibs/include/stream-obj.h
+index 1faa4df..8e28bf6 100644
+--- a/gfalibs/include/stream-obj.h
++++ b/gfalibs/include/stream-obj.h
+@@ -2,7 +2,7 @@
+ #define STREAM_OBJ_H
+
+ #include <fstream>
+-#include "zlib.h"
++#include <zlib.h>
+
+ class membuf : public std::streambuf {
+
+diff --git a/gfalibs/src/stream-obj.cpp b/gfalibs/src/stream-obj.cpp
+index e9694ee..c6eca26 100644
+--- a/gfalibs/src/stream-obj.cpp
++++ b/gfalibs/src/stream-obj.cpp
+@@ -5,7 +5,7 @@
+
+ #include "bed.h"
+ #include "struct.h"
+-#include "zlib.h"
++#include <zlib.h>
+ #include "global.h"
+ #include "log.h"
+ #include "threadpool.h"
+diff --git a/src/reads.cpp b/src/reads.cpp
+index 866f49b..ac714cf 100644
+--- a/src/reads.cpp
++++ b/src/reads.cpp
+@@ -14,7 +14,7 @@
+ #include "functions.h" // global functions
+ #include "stream-obj.h"
+
+-#include "zlib.h"
++#include <zlib.h>
+ #include "zstream/zstream_common.hpp"
+ #include "zstream/ozstream.hpp"
+ #include "zstream/ozstream_impl.hpp"