adding RDEVAL #52070
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| #!/usr/bin/env bash | ||
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| set -o errexit | ||
| set -o nounset | ||
| set -o xtrace | ||
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| make | ||
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| # mkdir -vp "${PREFIX}/bin" | ||
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| # # Define installation manifest | ||
| # declare -A files=( | ||
| # ["bam_depth.sh"]="0755" | ||
| # ["halfdeep.sh"]="0755" | ||
| # ["halfdeep.r"]="0755" | ||
| # ["scaffold_lengths.py"]="0755" | ||
| # ) | ||
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| # # Install files | ||
| # for file in "${!files[@]}"; do | ||
| # if [[ ! -f "$SRC_DIR/$file" ]]; then | ||
| # echo "Source file $file not found in $SRC_DIR" >&2 | ||
| # exit 1 | ||
| # fi | ||
| # | ||
| # if ! install -v -m "${files[$file]}" "$SRC_DIR/$file" "$PREFIX/bin/$file"; then | ||
| # echo "Failed to install $file" >&2 | ||
| # exit 1 | ||
| # fi | ||
| # done |
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| Original file line number | Diff line number | Diff line change |
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| {% set name = "rdeval" %} | ||
| {% set version = "0.0.2" %} | ||
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| package: | ||
| name: {{ name|lower }} | ||
| version: {{ version }} | ||
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| source: | ||
| url: https://github.com/vgl-hub/{{ name }}/archive/refs/tags/v{{ version }}.zip | ||
| sha256: 78500c88efa48f62f1907301bf36c9b689bd6933a59bd4a38974f0af393ed541 | ||
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| requirements: | ||
| build: | ||
| - {{ compiler('cxx') }} | ||
| - make | ||
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| build: | ||
| number: 0 | ||
| run_exports: | ||
| - {{ pin_subpackage(name|lower, max_pin="x.x") }} | ||
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| test: | ||
| commands: | ||
| - ${PREFIX}/bin/genodsp --help | ||
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| about: | ||
| home: https://github.com/vgl-hub/{{ name }} | ||
| summary: A general purpose, multithreaded read analysis and manipulation tool. | ||
| license: MIT | ||
| license_file: LICENSE | ||
| license_url: https://github.com/vgl-hub/{{ name }}/blob/main/LICENSE | ||
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There was a problem hiding this comment. 💡 Codebase verification LICENSE file verified and README requires a detailed Description section
🔗 Analysis chainVerify license file and update summary
🏁 Scripts executedThe following scripts were executed for the analysis: Script: #!/bin/bash
# Verify license file existence and content
gh api repos/vgl-hub/rdeval/contents/LICENSE --jq '.content' | base64 -d
# Check if there's a more detailed description in README
gh api repos/vgl-hub/rdeval/contents/README.md --jq '.content' | base64 -d | grep -A 5 "^#.*Description"
Length of output: 298 Script: #!/bin/bash
# Verify license file existence and content without using base64
gh api repos/vgl-hub/rdeval/contents/LICENSE --raw
# Check if there's a more detailed description in README
gh api repos/vgl-hub/rdeval/contents/README.md --raw | grep -A 5 "^#.*Description"
Length of output: 2865 Script: #!/bin/bash
# Verify license file existence and content using jq to decode base64
gh api repos/vgl-hub/rdeval/contents/LICENSE --jq '.content | @base64d'
# Check if there's a more detailed description in README using jq to decode and grep for keywords
gh api repos/vgl-hub/rdeval/contents/README.md --jq '.content | @base64d' | grep -A 5 "^#.*Description"
Length of output: 1244 |
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💡 Codebase verification
Naming inconsistency between binary and package
The binary name
genodspinrecipes/rdeval/meta.yamldiffers from the package namerdeval. Please verify if this is intentional and update for consistency if necessary.🔗 Analysis chain
Enhance test coverage and clarify binary name
Two concerns:
genodspdiffers from the package namerdeval. Please clarify if this is intentional.🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
Length of output: 9627