Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

maker: Update sha256 and use homebrew/core/bioperl #1420

Merged
merged 1 commit into from
Oct 12, 2021

Conversation

sjackman
Copy link
Member

  • Have you followed the guidelines for contributing?
  • Have you checked that there aren't other open pull requests for the same formula update/change?
  • Have you built your formula locally with brew install --build-from-source FORMULA, where FORMULA is the name of the formula you're submitting?
  • Does your build pass brew audit --strict FORMULA (after doing brew install FORMULA)?

@sjackman sjackman self-assigned this Sep 30, 2021
@sjackman sjackman added the hacktoberfest https://hacktoberfest.digitalocean.com label Oct 1, 2021
@sjackman
Copy link
Member Author

sjackman commented Oct 1, 2021

*** Error in `/home/linuxbrew/.linuxbrew/Cellar/perl/5.34.0/bin/perl': munmap_chunk(): invalid pointer: 0x00007ff67adf3127 ***
======= Backtrace: =========
336
/lib/x86_64-linux-gnu/libc.so.6(+0x777f5)[0x7ff67e7657f5]
337
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x1a8)[0x7ff67e7726e8]
338
/home/linuxbrew/.linuxbrew/Cellar/perl/5.34.0/lib/perl5/5.34.0/x86_64-linux-thread-multi/CORE/libperl.so(perl_destruct+0x1bcd)[0x7ff67eb3274d]
339
/home/linuxbrew/.linuxbrew/Cellar/perl/5.34.0/bin/perl(main+0x111)[0x400f01]
340
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7ff67e70e840]
341
/home/linuxbrew/.linuxbrew/Cellar/perl/5.34.0/bin/perl(_start+0x29)[0x400f79]

https://github.com/brewsci/homebrew-bio/pull/1420/checks?check_run_id=3761968791#step:5:334

@sjackman
Copy link
Member Author

sjackman commented Oct 1, 2021

PERL Dependencies:	MISSING
		  !  Inline::C
		  !  DBD::SQLite
		  !  Bit::Vector

ERRORS/WARNINGS FOUND IN PREREQUISITES.  You may wish to install the versions
of the modules indicated above before proceeding with this installation
…
MAKER PACKAGE:		MISSING PREREQUISITES
…
* MISSING PREREQUISITES - CANNOT CONTINUE!!
Configuring MAKER with MPI support

https://github.com/brewsci/homebrew-bio/pull/1420/checks?check_run_id=3761968809#step:4:147

@sjackman sjackman added the build failure CI fails while building the software label Oct 1, 2021
@sjackman sjackman merged commit e16a2e4 into brewsci:develop Oct 12, 2021
@sjackman sjackman deleted the sj/maker branch October 12, 2021 21:31
@sjackman
Copy link
Member Author

Merging without updating the bottles, because they failed to build, but I want to remove brewsci/bio/bioperl in favour of homebrew/core/bioperl, so merging anyway.

@sjackman
Copy link
Member Author

Opened PR #1433 maker: Bump revision for bioperl

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
build failure CI fails while building the software hacktoberfest https://hacktoberfest.digitalocean.com
Development

Successfully merging this pull request may close these issues.

1 participant