Merge pull request #229 from broadinstitute/update_nan

Update utils.smk
broadinstitute · Jul 8, 2024 · c08adc3 · c08adc3
2 parents 875043f + b146f3c
commit c08adc3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/utils.smk b/workflow/rules/utils.smk
@@ -80,7 +80,7 @@ def determine_filtered_prediction_file_format(threshold, config):
 def load_biosamples_config(config):
 	biosamples_config = pd.read_csv(
 		config["biosamplesTable"], sep="\t", na_values=""
-	).replace([np.NaN], [None]).set_index("biosample", drop=False)
+	).replace([np.nan], [None]).set_index("biosample", drop=False)
 	biosamples_config["HiC_resolution"] = biosamples_config["HiC_resolution"].replace([None], [0]).astype(int)
 	_validate_biosamples_config(biosamples_config)
 	_configure_tss_and_gene_files(biosamples_config)