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update pairedtag test wdl
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ekiernan committed Jan 2, 2025
1 parent 0c24ffe commit 6dd53b0
Showing 1 changed file with 2 additions and 6 deletions.
8 changes: 2 additions & 6 deletions verification/test-wdls/TestPairedTag.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ version 1.0
import "../../pipelines/skylab/paired_tag/PairedTag.wdl" as PairedTag
import "../../verification/VerifyPairedTag.wdl" as VerifyPairedTag
import "../../tasks/broad/Utilities.wdl" as Utilities
import "../../tasks/broad/CopyFilesFromCloudToCloud.wdl" as Copy
import "../../tasks/broad/TerraCopyFilesFromCloudToCloud.wdl" as Copy

workflow TestPairedTag {

Expand Down Expand Up @@ -52,8 +52,6 @@ workflow TestPairedTag {
String truth_path
String results_path
Boolean update_truth
String vault_token_path
String google_account_vault_path
Boolean run_cellbender = false
String cloud_provider

Expand Down Expand Up @@ -127,11 +125,9 @@ workflow TestPairedTag {
])

# Copy results of pipeline to test results bucket
call Copy.CopyFilesFromCloudToCloud as CopyToTestResults {
call Copy.TerraCopyFilesFromCloudToCloud as CopyToTestResults {
input:
files_to_copy = flatten([pipeline_outputs, pipeline_metrics]),
vault_token_path = vault_token_path,
google_account_vault_path = google_account_vault_path,
destination_cloud_path = results_path
}

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