R/qtl2ggplot is a reimplementation of the data visualizations in R/qtl2, which mostly rely on base graphics, to use ggplot2 and related routines.
You can now install qtl2ggplot direction from CRAN:
install.packages("qtl2ggplot")
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Extension of R/qtl2plot to ggplot2
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byandell-sysgen/qtl2ggplot
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Extension of R/qtl2plot to ggplot2
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