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Can I use hicDifferentialTAD to analyze the TAD differences among three samples? #897

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ZJU-Plumber opened this issue Mar 24, 2024 · 0 comments

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@ZJU-Plumber
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Hello, I have tried using hicDifferentialTAD to identify TAD differences pairwise among three samples. However, I've found it challenging to further analyze these results to distinguish sample-specific TADs or identify TADs common to multiple samples since the TADs file I got is the pairwise results.
Could you give me any suggestions?Thank you!

Here is my software information:
hicexplorer 3.7.3
Python 3.8.18 (default, Sep 11 2023, 13:40:15)
Downloaded from conda

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