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131 Open 503 Closed
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Issues list

Question on TAD parameter settings
#920 opened Dec 27, 2024 by YiChienLee1010
2
Normalization
#919 opened Dec 19, 2024 by BenxiaHu
5
Genomic region
#918 opened Dec 18, 2024 by dzwzs
Inconsistency in Distance Calculation and Occurrences in expected_interactions and obs_exp_matrix
#917 opened Dec 8, 2024 by mhjiang97
7 tasks done
TAD missing
#916 opened Dec 1, 2024 by 80QvQ08
Strange AggregatePlots with diagonal
#915 opened Nov 29, 2024 by robertferr
HiCPlotmatrix
#913 opened Nov 14, 2024 by DakeshiKitano
hicQuickQC CLI quirks
#912 opened Nov 4, 2024 by bernt-matthias
hicConvertFormat cooler to h5 format
#911 opened Oct 31, 2024 by BenxiaHu
hicPCA error: IndexError: list index out of range. raise ValueError('x and y must have length at least 2.') ValueError: x and y must have length at least 2.
#907 opened Aug 14, 2024 by shRDJr
hicMergeMatrixBins changes chromosome sizes
#906 opened Jul 22, 2024 by qolba
2
Clarification on Matrix Preprocessing for hicDifferentialTAD
#905 opened Jul 18, 2024 by GuanrongYan
Misleading Documentation for --tadDomains, -td Parameter in hicDifferentialTAD Tool
#904 opened Jul 18, 2024 by GuanrongYan
No module named 'hic2cool'
#903 opened Jul 17, 2024 by sanjin725
1
HiC merging bins
#900 opened Apr 25, 2024 by kunaltin2012
error in running hicDetectLoops
#899 opened Apr 5, 2024 by pangulu
About hicPCA error
#898 opened Mar 31, 2024 by HW-Superior
1
Can I use hicDifferentialTAD to analyze the TAD differences among three samples?
#897 opened Mar 24, 2024 by ZJU-Plumber
hicFindTADs difficult to distinguish different TADs
#896 opened Mar 20, 2024 by wangguiqian
3
hicCorrectMatrix correct
#895 opened Mar 19, 2024 by wangguiqian
problem with hicAggragateContacts
#894 opened Feb 26, 2024 by eferreA9
1
installation failure :: trained_models missing from requirements
#893 opened Feb 22, 2024 by EricDeveaud
hicPCA flip signs with rna-seq?
#892 opened Feb 17, 2024 by Naveen-Ahuja
1
LearningWithNoisyLabels was renamed to
#891 opened Feb 11, 2024 by bgruening
hicTrainTADClassifier raises ValueError
#890 opened Feb 11, 2024 by bgruening
1
ProTip! Exclude everything labeled bug with -label:bug.