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update intentation
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tpall committed Dec 9, 2019
1 parent 79a69ae commit 327d86b
Showing 1 changed file with 5 additions and 4 deletions.
9 changes: 5 additions & 4 deletions rules/blast.smk
Original file line number Diff line number Diff line change
Expand Up @@ -12,11 +12,12 @@ def concatenate_tables(input, output, sep = "\s+"):

# Prepare taxonomy annotation tables.
rule prepare_taxonomy_data:
input: config["names"], config["nodes"], config["division"]
output:
input:
config["names"], config["nodes"], config["division"]
output:
expand("taxonomy/{file}.csv", file = ["names", "nodes", "division"])
wrapper:
"https://raw.githubusercontent.com/avilab/virome-wrappers/master/prepare_taxonomy_data"
wrapper:
"https://raw.githubusercontent.com/avilab/virome-wrappers/master/prepare_taxonomy_data"

# Blastn, megablast and blastx input, output, and params keys must match commandline blast option names. Please see https://www.ncbi.nlm.nih.gov/books/NBK279684/#appendices.Options_for_the_commandline_a for all available options.
# Blast against nt virus database.
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