pyARD

ARD reduction for HLA with python

• Free software: LGPL 3.0
• Documentation: https://pyard.readthedocs.io.

Install

# from source
python3 -m venv venv
source venv/bin/activate
pip install -r requirements.txt
python setup.py install

# from PyPi
pip install pyard

Example

from pyard import ARD

# Initialize ARD object
ard = ARD('3290')

# Initialize with latest DB
ard = ARD()

allele = "A*01:01:01"

ard.redux(allele, 'G')
# >> 'A*01:01:01G'

ard.redux(allele, 'lg')
# >> 'A*01:01g'

ard.redux(allele, 'lgx')
# 'A*01:01'

ard_gl = ard.redux_gl("A*01:01/A*01:01N+A*02:AB^B*07:02+B*07:AB", "G")
# >>> ard_gl
# 'B*07:02:01G+B*07:02:01G^A*01:01:01G+A*02:01:01G/A*02:02'

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.