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@labsyspharm

Laboratory of Systems Pharmacology @ Harvard

Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.

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  1. ashlar ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    Python 132 43

  2. mcmicro mcmicro Public

    Multiple-choice microscopy pipeline

    Nextflow 118 58

  3. scimap scimap Public

    Spatial Single-Cell Analysis Toolkit

    Python 81 27

  4. minerva-story minerva-story Public

    Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

    HTML 50 14

  5. cylinter cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    Python 28 12

  6. minerva_analysis minerva_analysis Public

    JavaScript 26 6

Repositories

Showing 10 of 156 repositories
  • minerva-author-ui Public

    Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

    labsyspharm/minerva-author-ui’s past year of commit activity
    JavaScript 4 MIT 5 2 4 Updated Jan 9, 2025
  • scimap Public

    Spatial Single-Cell Analysis Toolkit

    labsyspharm/scimap’s past year of commit activity
    Python 81 MIT 27 36 2 Updated Jan 4, 2025
  • beta-segmentinator Public
    labsyspharm/beta-segmentinator’s past year of commit activity
    Python 0 0 0 0 Updated Jan 2, 2025
  • paired-eval Public

    Fast implementation of paired eval

    labsyspharm/paired-eval’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Dec 28, 2024
  • palom Public

    Piecewise alignment for layers of mosaics

    labsyspharm/palom’s past year of commit activity
    Python 21 MIT 4 4 2 Updated Dec 19, 2024
  • stic-ms-2024 Public

    Custom codes related to Kader, Lin, Hug manuscript 2024

    labsyspharm/stic-ms-2024’s past year of commit activity
    R 0 0 0 0 Updated Dec 13, 2024
  • harvardtissueatlas Public

    Harvard Tissue Atlas website

    labsyspharm/harvardtissueatlas’s past year of commit activity
    SCSS 3 5 2 0 Updated Dec 9, 2024
  • cycif.org Public

    cycif.org GitHub Pages Website

    labsyspharm/cycif.org’s past year of commit activity
    JavaScript 2 MIT 9 4 4 Updated Dec 6, 2024
  • CRC_atlas_2022 Public
    labsyspharm/CRC_atlas_2022’s past year of commit activity
    MATLAB 12 MIT 4 2 0 Updated Dec 5, 2024
  • minerva-core-ui Public

    A microscopy viewer for non-experts

    labsyspharm/minerva-core-ui’s past year of commit activity
    TypeScript 0 MIT 2 10 2 Updated Dec 4, 2024
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