glycogen-starvation

Python and MATLAB code and data for the E. coli glycogen starvation project

Introduction

The data and Python/MATLAB code used for analysis and figure generation of E. coli glycogen starvation project is provided here. The manuscript citation is as follows:

Bacterial glycogen provides short-term benefits in changing environments

Karthik Sekar, Stephanie M. Linker, Jen Nguyen, Alix Grünhagen, Roman Stocker, Uwe Sauer

The parts

This Github is divided as follows:

• Part 1 - Real-time metabolomics data and figure generation
• Part 2 - Intracellular glycogen data and figure generation
• Part 3 - Growth rate and lag time data and calculations
• Part 4 - Glucose uptake rate calculations
• Part 5 - Microfluidic-based microscopy calculations