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Mahesh Binzer-Panchal edited this page Oct 4, 2024 · 4 revisions

Welcome to the nf-cascade wiki!

Difficulty: Intermediate : Guided example for nf-core style pipelines

Difficulty: Advanced : Guided Example for general pipelines

General principle

graph TD
    copyModule[Copy Module Code] --> include[Include module in workflow]
    include --> supplyInputs[Supply channel inputs]
    supplyInputs --> test[Test the first process]
    test --> nextModule[Include the next module]
    nextModule --> extractSamplesheet[Extract the samplesheet]
    nextModule --> makeSamplesheet[Make the samplesheet]