The new release ImReP-0.8 includes the following new features:
- imrep-bam.sh (a wrapper to run ImReP for bam file with mapped and unmapped reads) is retired.
- The functionality of imrep-bam.sh is now integrated into imrep.py
- --digGold and -a options have been added allowing to restore the unmapped reads from mapped reads using original raw reads (all reads)
Also, minor bugs remaining from the previous release were fixed.