Build Status (Travis CI):
The goal of this project is to implement a faceted search tool to display the data from InterMine database, allowing the users to search easily within the different mines available around InterMine without the requirement of having an extensive knowledge of the data model.
For the project organization, please refer to InterMine
Please note that the development is very early on and the project is not ready to use yet.
Try it out with the Heroku deployment here (automatic deployment, may have some delay)
Please visit Getting Started
Check package.json file
Apart from the in-line comments in the code, documentation generated with documentation.js can be accessed here. To update the documentation, the 'gulp documentation' is available.
| Filter | Ontology concepts |
|---|---|
| GO Annotation | goAnnotation.ontologyTerm.name |
| Dataset Name | dataSets.name |
| Pathway Name | pathways.name |
| Organism short name | Gene.organism.shortName |
| Location | locations.start + locations.end + locations.locatedOn.primaryIdentifier |
| Diseases (OMIM) | diseases.name |
| ClinVar | alleles.clinicalSignificance + alleles.type |
| Protein Localisation | proteinAtlasExpression.cellType + proteinAtlasExpression.tissue.name + proteinAtlasExpression.expressionType + proteinAtlasExpression.level + proteinAtlasExpression.reliability |
| Protein Domain Name | proteins.proteinDomainRegions.proteinDomain.name |
| Interactions | interactions.participant2.symbol + interactions.details.type + interactions.details.dataSets.name |
| Expression | atlasExpression.pValue + atlasExpression.tStatistic + atlasExpression.expression + atlasExpression.dataSets.name |
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Find a thing to fix/implement in Issues or come up with your own idea, create a discussion issue for it and get a feedback.
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Fork the repository.
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Create your new feature branch.
git checkout -b my-new-feature
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Commit your changes.
git commit -am 'Add some feature -
Push to the newly created feature branch.
git push origin my-new-feature
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Create a new Pull Request
You can contact the developers by opening a new issue in this repository here.
Searching in HumanMine (Release 1.1.0)
Searching in HumanMine for Alzheimer disease (Release 1.1.0)
Searching in FlyMine (Release 1.1.0)
Searching in HymenopteraMine (Release 1.1.0)
