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0.0.43

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@0x55555555 0x55555555 released this 30 Nov 10:10
· 396 commits to master since this release

Added

  • Added pod5 tools entry-point
  • Added api to query file version information as written on disk.

Changed

  • Fixed name of internal utils - "pad_file".
  • Fixed spelling of various internal variables.
  • Reformat c++ code with more consistent format file.
  • Fixed signal_chunk_size type error in convert-from-fast5
  • Replaced ont_fast5_api dependency with vbz_h5py_plugin
  • Restructured Python packaging to include lib_pod5 which contains the native bindings build from pybind11.
  • pod5_format and pod5_format_tools are now pure python packages which depend on lib_pod5
  • Python packages pod5_format and pod5_format_tools have been merged into single pod5 pure-python package.
  • pod5-convert-from-fast5 --output-one-to-one reworked so that output files maintain the input structure making this argument more flexible and avoid filename clobbering.
  • Added missing lib_pod5.update_file function to pyi.
  • pod5-convert-from-fast5 output now takes existing directories and writes output.pod5 (current behaviour) or creates a new file with the given name if it doesn't exist.
  • Renamed arguments in tools relating to multi-processing / multi-threading from -p/--processes to the mode common -t/--threads.