0.0.43
Pre-release
Pre-release
Added
- Added pod5 tools entry-point
- Added api to query file version information as written on disk.
Changed
- Fixed name of internal utils - "pad_file".
- Fixed spelling of various internal variables.
- Reformat c++ code with more consistent format file.
- Fixed signal_chunk_size type error in convert-from-fast5
- Replaced ont_fast5_api dependency with vbz_h5py_plugin
- Restructured Python packaging to include
lib_pod5
which contains the native bindings build from pybind11. pod5_format
andpod5_format_tools
are now pure python packages which depend onlib_pod5
- Python packages
pod5_format
andpod5_format_tools
have been merged into single pod5 pure-python package. pod5-convert-from-fast5 --output-one-to-one
reworked so that output files maintain the input structure making this argument more flexible and avoid filename clobbering.- Added missing lib_pod5.update_file function to pyi.
pod5-convert-from-fast5
output now takes existing directories and writes output.pod5 (current behaviour) or creates a new file with the given name if it doesn't exist.- Renamed arguments in tools relating to multi-processing / multi-threading from -p/--processes to the mode common -t/--threads.