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Add bio.tools for Smalt #250

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Add bio.tools for Smalt #250

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5a83f6e
Add bio.tools for smalt
bebatut Feb 23, 2024
5d0c4e4
Fix link to remote_repository_url
bebatut Feb 23, 2024
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2 changes: 1 addition & 1 deletion tools/smalt/.shed.yml
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Expand Up @@ -2,6 +2,6 @@ categories: [Sequence Analysis]
description: SMALT aligns DNA sequencing reads with a reference genome.
long_description: SMALT employs a hash index of short words up to 20 nucleotides long and sampled at equidistant steps along the reference genome. For each sequencing read, potentially matching segments in the reference genome are identified from seed matches in the index and subsequently aligned with the read using dynamic programming.
homepage_url: http://www.sanger.ac.uk/science/tools/smalt-0
remote_repository_url: https://sourceforge.net/projects/smalt/
remote_repository_url: https://github.com/phac-nml/galaxy_tools/tree/master/tools/smalt
name: smalt
owner: nml
3 changes: 3 additions & 0 deletions tools/smalt/smalt_map.xml
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Expand Up @@ -4,6 +4,9 @@
<token name="@VERSION@">0.7.6</token>
<token name="@INPUT_TYPES@">fastq,fastq.gz,fastqsanger,fastqsanger.gz</token>
</macros>
<xrefs>
<xref type="bio.tools">smalt</xref>
</xrefs>
<requirements>
<requirement type="package" version="@VERSION@">smalt</requirement>
<requirement type="package" version="1.10">samtools</requirement>
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