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20.05

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@tom114 tom114 released this 28 May 16:15
· 8387 commits to development since this release
5f3a908
  • [UI]: Updated clients listing table to use ant.design tables.
  • [UI]: Sending email to sync user when a remote project's token expires.
  • [UI]: Fixed bug that prevented server side filtering for analysis name on analyses table. (20.01.01)
  • [UI]: Updated admin announcements table and creation to use ant.design.
  • [UI]: Fixed bug that preventing using the ngs-linker script with >= 330 samples.
  • [UI]: Updated breadcrumbs to have cleaner look and feel and include the actual project and sample names.
  • [UI/Developer]: Updated to react 16.13.0.
  • [Developer]: Added Apache 2.0 licence information to package.json.
  • [UI]: Fixed UI bugs preventing users from selecting single-end input files for analysis pipelines. (20.01.2)
  • [UI]: Icon cleanup preparing for upgrade to Ant Design v4.
  • [UI/Developer]: Remove husky because running into issues with prettier formatting on staged files..
  • [API/Developer]: Changed the SequencingRun type to allow a user-defined sequencerType instead of it being hardcoded to MiSeq.
  • [Developer]: Updated maven jetty plugin to version 9.4.24.v20191120.
  • [UI]: Updated Remote API Listing page to use Ant Design.
  • [UI]: Updated Administrator Users page to use Ant Design.
  • [UI]: Removed DataTables from overrepresented sequence file and run files page.
  • [REST]: Added a REST API endpoint to read assemblies for samples.
  • [UI]: Added selection for linker script to get assemblies in project/samples page.
  • [Developer]: bower completely removed.
  • [UI/Developer]: Updated analysis results page with Ant Design and React.
  • [UI]: Assemblies can now be uploaded through the sample files page. See more in our upgrade notes at https://irida.corefacility.ca/documentation/administrator/upgrades/#2005.
  • [UI/Developer]: Updated to Prettier 2.0.2
  • [UI/Developer]: Updated to eslint-plugin-react-hooks to 3.0.0.
  • [UI/Developer]: Removed angular-ui-bootstrap as a global dependency (still required on several pages).
  • [UI/Developer]: New login page with developer ability to override template.
  • [UI/Developer]: Added excel file viewer to analysis outputs view.
  • [UI]: Added selection to export assemblies to Galaxy.
  • [UI]: Updated Project > Members page to remove DataDables and use Ant Design.
  • [UI/Developer]: Added image file viewer to analysis outputs view.
  • [UI]: Moved project > details into the project > settings panel.
  • [UI]: Updated Project navigation to use Ant Design menu.
  • [UI/Developer]: Updated to JQuery v3.5.1 to fix security vulnerability.
  • [UI]: Fixed bug preventing the upload of *.fastqc.gz on Mac computers.
  • [UI]: Update Groups page to remove DataTables and use Ant Design.
  • [UI]: Update Groups details page to use Ant Design and remove DataTables.
  • [UI]: Fixed bug preventing display of execution tools for first file if a provenance for another file had been viewed.
  • [Documentation]: Updated Getting Started docs to include IRIDA log in info and an updated install-libs.sh run command.
  • [Developer/UI]: Upgraded to FastQC 0.11.9.
  • [UI]: Added FAST5 format support. FAST5 support is in beta and is subject to change. See more in our upgrade notes at https://irida.corefacility.ca/documentation/administrator/upgrades/#2005.
  • [UI]: Updated user groups to use Ant Design.
  • [UI]: Fixed bug preventing advanced visualization view page load.
  • [UI/Developer]: Updated analysis urls to work with a context path.
  • [UI]: Outputs and Tree view now span the full width of the page.
  • [Processing]: Fixed bug where analyses wouldn't run if project didn't have analysis priority.