Skip to content

20.09
Compare
Choose a tag to compare
@tom114 tom114 released this 24 Sep 17:21
· 7724 commits to development since this release
20.09
d58481a
This commit was signed with the committer’s verified signature.
apetkau Aaron Petkau
GPG key ID: AD7E54B88BAAA273
Learn about vigilant mode.
  • [UI] Updated project user groups to use Ant Design.
  • [UI/Developer]: Removed most dependency for momentjs (only on project samples filters).
  • [Developer]: Removed deprecated Long constructor.
  • [Developer]: Updated webpack-dev-server to fix security vulnerability caused by websocket-extensions 0.1.3.
  • [UI]: Update project metadata templates listing page to use Ant Design.
  • [UI/Developer]: Removed SASS compilation step from front end build. Everything is done using postcss now.
  • [Developer]: Bumped node version to 12.18.0.
  • [UI]: Fixed bug when creating/modifying a metadata template the user could not search for a field. (20.05.1)
  • [UI]: Fixed bug where managers could not load Users listing page. (20.05.1)
  • [UI]: Added functionality for users to synchronize assembly data from remote APIs.
  • [Developer]: Updated chromedriver to version latest.
  • [UI]: Removed gravatar and replaced with user icon.
  • [Developer]: Removed webpack-dev-server.
  • [UI]: Fixed issue where analysis results pages would hang after running with remote synchronized data. (20.05.2)
  • [Developer]: Updated chromedriver to version latest. (20.05.2)
  • [Developer]: Updated frontend dependencies (babel, fontawesome, and ant-icons)
  • [UI]: Updated NCBI Exports listing pages to use Ant Design Tables.
  • [UI/Developer]: Removed irida.cart.js (an older angularjs service for the cart).
  • [UI]: Fixed issue #637 where metadata toggles were not displaying in the "on" position properly on loading the advanced phylogenic viewer.
  • [UI]: Removed unused front end dependencies (angular-boostrap-lightbox and lodash.keys).
  • [Developer/UI]: Removed irida angular app. Individual components load themselves now.
  • [Developer/UI]: Updated to Ant Design v4.4.2.
  • [UI]: Updated importing numbers through excel file. IRIDA will now check for excel formatted numeric cells and keep the formatting. (20.05.3);
  • [UI]: Updated sample details metadata so that long values will be broken up over multiple lines. (20.05.3);
  • [Developer]: Updated babel-env to fix a security vulnerability caused by dependency elleptic
  • [UI]: Updated UI for creating a sample within a project.
  • [REST]: Removed broken XML serialization config from REST API classes. It was breaking content negotiation for some tools as it sometimes tried to return XML when it couldn't.
  • [UI]: Added Create New Project button to the Projects listing page.
  • [UI]: Fixed bug where import bulk metadata button was displayed on linelist page for project collaborators. (20.05.04)
  • [UI]: Fixed bug where add member to project button was displayed on project members page for project collaborators. (20.05.04)
  • [Developer]: Added optional method getAnalysisViewer for IridaPlugin to allow external applications to use IRIDA's built in analysis visualizations (such as the phylogenetic tree viewer).
  • [REST]: Fixed issue with double slashes sometimes getting added in OAuth2 redirect URI causing auth flow to fail.
  • [Workflow]: Updated the SNVPhyl pipeline to version 1.2.2.
  • [Developer]: Updated the Galaxy Docker instance to Galaxy 20.05.
  • [Workflow]: Updated the tools Shovill, Prokka, and Quast in the Assembly and Annotation pipeline. These updates mean the issue with out-of-date tbl2asn is now fixed and the value of SHOVILL_RAM will now be set automatically by Galaxy based on assigned resources to the tool.
  • [Workflow]: Updated the tools Shovill, Prokka, and Quast in the Assembly and Annotation Collection pipeline. Also moved tool Bundle collections from the IRIDA Toolshed to the Galaxy Main Toolshed.
  • [Workflow]: Removed dependency of IRIDA on the IRIDA Toolshed (https://irida.corefacility.ca/galaxy-shed). This means that all tools for IRIDA pipelines are now available on the main Galaxy toolshed and that IRIDA is compatible with newer versions of Galaxy (20.XX+).
  • [UI]: Created admin panel for simplifying administrator tasks (Users, Clients, Remote IRIDA Connections, Sequencing Runs, NCBI Exports, and Announcements).
  • [REST]: Updated REST API to handle errors when copying existing samples more gracefully.
  • [UI]: Updated the analysis results page to auto update the progress of an analysis.
  • [UI]: Updated the analyses table to auto update the progress of the displayed analyses.
  • [UI]: Updated Remote API Connection details page to use full Ant Design and updated Oauth.
  • [UI]: Updated Create Remote Synchronized Project page to use Ant Design and updated Oauth.
  • [UI]: Updated Remote Project Synchronization Settings page to use Ant Design and updated oauth.
Assets 4
Loading