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v0.2.0 - [2024-05-14]
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@mattheww95 mattheww95 released this 14 May 20:33
· 210 commits to main since this release
0.2.0
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v0.2.0 - [2024-05-14]

Added

  • Updated documentation for params. See PR 66

  • Fixed param typos in schema, config and docs. See PR 66

  • Added parameter to skip length filtering of sequences. See PR 66

  • Added locidex for allele calling. See PR 62

  • Updated directory output structure and names. See PR 66

  • Added tests for Kraken2 contig binning. See PR 66

Fixed

  • If you select to filter contigs by length, those contigs will now be used for subsequent analysis. See PR 66

  • Matched ECTyper and SISTR parameters to what is set in the current IRIDA. See PR 68

  • Updated StarAMR point finder DB selection to resolve error when in db selection when a database is not selected addressing issue. See PR 74

  • Fixed calculation of SeqtkBaseCount value include counts for both pairs of paird-end reads. See PR 65.

Changed

  • Changed the specific files and metadata to store within IRIDA Next. See PR 65

  • Added separate report fields for (PASSED|FAILED|WARNING) values and for the the actual value. See PR 65

  • Updated StarAMR to version 0.10.0. See PR 74

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