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Update README.md
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salbrec authored Dec 15, 2020
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Expand Up @@ -349,16 +349,16 @@ conda config --add channels bioconda
```

Now use the yml file `conda_env.yml` to create the conda environment with this call:
Now use the yml file `conda_env.yml` to create the conda environment and activate it.

```
conda env create -f conda_env.yml
conda activate seqQscorer
```

For the installation of the Bioconductor packages we made the experience that the best way is to install them separately within R using the BiocManager. This procedure successfully installed all dependencies in several tests.

```
conda activate seqQscorer
R
# Within R run the following lines to install the R packages needed:
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