Uprev unit test python, sqlfluff pass

smart-on-fhir · Apr 4, 2024 · 749a0b7 · 749a0b7
1 parent 4a60dc4
commit 749a0b7
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Showing 5 changed files with 5 additions and 6 deletions.
diff --git a/cumulus_library_covid/covid_symptom/define_ed_note.sql b/cumulus_library_covid/covid_symptom/define_ed_note.sql
@@ -61,4 +61,4 @@ FROM
             'Emergency department Consult note'
         )
     )
-    AS t (from_system, from_code, from_display, system, code, display); --noqa: AL05
+        AS t (from_system, from_code, from_display, system, code, display); --noqa: AL05
diff --git a/cumulus_library_covid/covid_symptom/define_study_period.sql b/cumulus_library_covid/covid_symptom/define_study_period.sql
@@ -17,4 +17,4 @@ FROM (
     ('delta', date('2021-06-21'), date('2021-12-19')),
     ('omicron', date('2021-12-20'), date('2022-06-01'))
 )
-AS t (variant_era, variant_start, variant_end);
+    AS t (variant_era, variant_start, variant_end);
diff --git a/cumulus_library_covid/covid_symptom/define_symptom.sql b/cumulus_library_covid/covid_symptom/define_symptom.sql
@@ -528,4 +528,4 @@ FROM (
     ('C0242429', 'T184', '162397003', 'SNOMEDCT_US', 'dynophagia', 'Sore throat'),
     ('C0242429', 'T184', 'R07.0', 'ICD10CM', 'R07.0', 'Sore throat')
 )
-AS t (cui, tui, code, code_system, text, pref);
+    AS t (cui, tui, code, code_system, text, pref);
diff --git a/cumulus_library_covid/covid_symptom/table_prevalence_ed.sql b/cumulus_library_covid/covid_symptom/table_prevalence_ed.sql
@@ -32,7 +32,7 @@ join_2020 AS (
         COALESCE(pcr.covid_pcr_result_display, 'None') AS covid_pcr_result,
         COALESCE(dx.cond_code, 'None') AS covid_icd10,
         (dx.cond_code IS NOT NULL OR pcr.covid_pcr_result_display = 'POSITIVE')
-        AS covid_dx,
+            AS covid_dx,
         COALESCE(cn.symptom_display, 'None') AS covid_symptom,
         COALESCE(icd10.icd10_display, 'None') AS symptom_icd10_display
     FROM study_period AS p

diff --git a/cumulus_library_covid/covid_symptom/table_symptom.sql b/cumulus_library_covid/covid_symptom/table_symptom.sql
@@ -73,8 +73,7 @@ WITH temp_period AS (
         age_group,
         gender,
         race_display,
-        enc_class_display
-        AS ed_note
+        enc_class_display AS ed_note
     FROM covid_symptom__study_period
 ),