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chore: fix free disk space #268

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merged 3 commits into from
Oct 26, 2023
Merged

chore: fix free disk space #268

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2c96637
chore: fix free disk space
johanneskoester Oct 11, 2023
740b531
Update qc.smk
FelixMoelder Oct 26, 2023
2532556
update freebayes wrapper
FelixMoelder Oct 26, 2023
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4 changes: 2 additions & 2 deletions .github/workflows/main.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -45,7 +45,7 @@ jobs:
- name: update apt
run: sudo apt-get update
- name: Free Disk Space (Ubuntu)
uses: jlumbroso/free-disk-space@v1.2.0
uses: jlumbroso/free-disk-space@v1.3.0
with:
# this might remove tools that are actually needed,
# if set to "true" but frees about 6 GB
Expand All @@ -57,7 +57,7 @@ jobs:
dotnet: true
haskell: true
large-packages: true
docker-images: true
docker-images: false
swap-storage: true

- uses: actions/checkout@v2
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2 changes: 1 addition & 1 deletion workflow/rules/candidate_calling.smk
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Expand Up @@ -19,7 +19,7 @@ rule freebayes:
),
threads: max(workflow.cores - 1, 1) # use all available cores -1 (because of the pipe) for calling
wrapper:
"v2.3.2/bio/freebayes"
"v2.7.0/bio/freebayes"


rule delly:
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2 changes: 1 addition & 1 deletion workflow/rules/qc.smk
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Expand Up @@ -48,4 +48,4 @@ rule multiqc:
log:
"logs/multiqc/{group}.log",
wrapper:
"v2.3.2/bio/multiqc"
"v2.7.0/bio/multiqc"
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