GitHub - tiagoantonio/maf2anno-split: This Perl script splits a TGCA .maf file into separated sample files and annotate each of them using ANNOVAR (hg19) instaled at /share/apps/ANNOVAR.

tiagoantonio / maf2anno-split Public

Notifications You must be signed in to change notification settings
Fork 0
Star 0

This Perl script splits a TGCA .maf file into separated sample files and annotate each of them using ANNOVAR (hg19) instaled at /share/apps/ANNOVAR.

MIT license

0 stars 0 forks Branches Tags Activity

Star

Notifications

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
README		README
license.txt		license.txt
maf2anno_split.pl		maf2anno_split.pl

Repository files navigation

###############################################################################
#
# April 26 2016 
#
# maf2anno.split
#
# This Perl script splits a TGCA .maf file into separated sample files and 
# annotate each of them using ANNOVAR (hg19) instaled at /share/apps/ANNOVAR.
# Outputs: ANNOVAR output files and a log file containing the total number of 
# samples annotated and total number of SNVs annotated.
#
# 
# USAGE: perl maf2anno.split <TGCAfile.maf>
# 
# Required modules: IPC::System::Simple, Parallel::ForkManager, List::MoreUtils, 
#                   List::Util
#
# If you have any question or suggestions please contact the author:
#
# Author: Tiago A. de Souza
# [email protected]
# github.com/tiagoantonio
#
# Licensed under MIT License
#
#################################################################################