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Release 1.14.0

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@iainrb iainrb released this 10 Feb 16:05
· 254 commits to devel since this release
  • Replace identity metric with Bayesian version:
    • Update QC pass/fail evaluation, plots and reports
    • Bugfix in Utilities.pm: Need to import Runnable
    • Removed identity_qc workflow and tests from Ruby code
  • New workflow to write Plink and run gencall QC only
    • Refactored ready_workflow.pl
    • Fixes Text::CSV issue #406
    • Fixes identity argument issue #434
  • Extensive refactor of QC metric collation
    • Converted Collation.pm to a Moose class Collator.pm; enables better code structure and use of Loggable Role
    • Replace single collate() method with individual methods to write output files, update pipeline database, etc.
    • Supply only one JSON config file, which determines all thresholds (instead of allowing a filter file to override the config thresholds for the pipeline database update)
    • Use Text::CSV instead of split() to read metric results
  • Added tests for dry-run mode of Fluidigm archive script