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Converted Collation.pm to a Moose class Collator.pm; enables better code structure and use of Loggable Role
Replace single collate() method with individual methods to write output files, update pipeline database, etc.
Supply only one JSON config file, which determines all thresholds (instead of allowing a filter file to override the config thresholds for the pipeline database update)
Use Text::CSV instead of split() to read metric results
Added tests for dry-run mode of Fluidigm archive script