finalize stub test, update version

phac-nml · Jan 3, 2025 · f30c373 · f30c373
1 parent da53277
commit f30c373
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,31 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## v0.2.0 - [2025-01-03]
+
+### `Added`
+
+- `nf-schema` plugin and associated functions
+  - Schemas
+  - Param summary, param help, version
+  - samplesheetToList
+- `params.input <CSV>` to allow input samplesheets
+- `iridanext` plugin
+  - The associated data will come out in 0.3.0
+- Most of the required nf-core files
+- CI tests and linting
+
+### `Changed`
+
+- Logic for input data
+- Logic for skipping specific modules
+  - Allowed to skip el_gato ST
+  - Allowed to skip el_gato allele plotting
+
+### `Updated`
+
+- Usage and README docs for the input adjustments
+
 ## v0.1.0 - [Beta-Test-2024-11-29]
 
 ### `Added`

diff --git a/nextflow.config b/nextflow.config
@@ -222,7 +222,7 @@ manifest {
     description     = """Legionella pneumophila WGS analysis"""
     mainScript      = "main.nf"
     nextflowVersion = "!>=23.10.1"
-    version         = "0.1.0"
+    version         = "0.2.0"
     doi             = ""
     defaultBranch   = "main"
 }

diff --git a/tests/main.nf.test b/tests/main.nf.test
@@ -71,6 +71,7 @@ nextflow_pipeline {
                 fastq_dir = "$baseDir/tests/test_data/"
                 outdir = "results"
                 min_reads = 0
+                kraken2_db = "./"
             }
         }
         then {

diff --git a/tests/nextflow.config b/tests/nextflow.config
@@ -7,14 +7,12 @@
 process {
     resourceLimits = [
         cpus: 2,
-        memory: '8.GB',
+        memory: '4.GB',
         time: '2.h'
     ]
 }
 
-params {
-    // Limit resources for github actions
-    max_cpus                    = 1
-    max_memory                  = '8.GB'
-    max_time                    = '2.h'
-}
+// Limit resources for github actions
+params.max_cpus                    = 2
+params.max_memory                  = '4.GB'
+params.max_time                    = '2.h'