Code

Interactive Mode and Renaming APIs#70

Code

Merged

cindytsai merged 167 commits intoyt-project:mainyt-project/libyt:mainfrom cindytsai:PR-Reload&Renamecindytsai/libyt:PR-Reload&RenameCopy head branch name to clipboardFeb 9, 2023

+3,027-1,246

Commits

Commits on Nov 22, 2022

• Merge branch 'Doc'

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  committed
  245ee5c

Commits on Nov 27, 2022

• Add interactive mode in Makefile

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  766fe05

Commits on Dec 13, 2022

• yt_interactive_mode

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  1213245

Commits on Dec 15, 2022

• Add new dict for interactive mode and add script's global under it.

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  eb51a6a

Commits on Dec 16, 2022

• yt_interactive_mode pure python interactive loop in imported script namespace.

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  2ca8793

Commits on Dec 17, 2022

• Change to Py_XDECREF, since they might return nothing.

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  e598dcc

• Fix bug.

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  3fc6618

• Make sure every rank reach this stage.

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  8e4154c

• fflush before MPI_Barrier, but it still don't fix the issue of printing everything before prompt.

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  7cb7c55

Commits on Dec 18, 2022

• Add parameter _interactive_mode in sys for setting exceptionhook in yt.

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  2b8b32a

Commits on Dec 20, 2022

• Add comments for interactive mode, and reformat code.

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  fad334f

• Add libyt.interactive_mode["func_err_msg"] for function traceback msg.

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  b30450a

• Wrap inline function in try/except when calling.

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  81c6771

Commits on Dec 21, 2022

• Use exit to step out interactive mode for now.

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  128cb01

• func_status class for recording inline function status in interactive mode.

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  e6c789f

• Make global vector g_func_status_list for function status.

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  43fc42c

• Reformat yt_init and set g_func_status_list capacity default to10.

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  2f95766

• add func_status.cpp

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  1e053c9

Commits on Dec 22, 2022

• Update func_status class.

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  f70be44

• Add func_status_list class to control.

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  2a5b86f

• Forget to define INTERACTIVE_MODE.

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  727bab0

Commits on Dec 24, 2022

• Add function body in libyt.interactive_mode["func_body"], and get func name list.

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  6080ea4

• Copy constructor for func_status class.

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  1b80d77

• Add get_func_index.

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  8617034

Commits on Dec 26, 2022

• Update g_func_status_list and their func body in yt_inline.

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  21738f2

• Forget to overload operator[].

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  ff6d2aa

• Fix bug and header infinite loop

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  b392c8c

• Make INTERACTIVE_MODE a default feature for now, probably add another header later.

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  b28e32c

• Forgot to include \" when adding string as key.

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  b551317

• Reset func status list in yt_free_grids.

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  9cd61ff

• Add method print_summary to func_status_list.

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  9bc2320

Commits on Dec 29, 2022

• Make m_Status to int.

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  b813e5a

Commits on Dec 30, 2022

• Make get_status collective when m_Status is running, meaning if one rank failed, everyone failed.

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  720c1d5

• Each rank print their err msg just won't sync.

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  43333f4

• Can parse error msg from python string to char.

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  541500c

Commits on Dec 31, 2022

• Serial print python error.

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  fc09417

• No idea why the indent worked but printing something exceeding the range.

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  c284739

• Alternative for substr.

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  6a4e748

• Print out (none) if no error on that rank.

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  d42f963

• Leaving interactive mode if no stop file detected and no failed func.

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  bac1a1c

• Ignore blank line if prompt is >>>.

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  c440c75

• Parse %libyt

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  15b935c

Commits on Jan 2, 2023

• Add libyt command in interactive shell.

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  068ce4d

Commits on Jan 3, 2023

• Defining %libyt command.

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  0a3e20d

• Hide mpi process in define_command class for libyt command.

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  8ced936

Commits on Jan 4, 2023

• Define collective libyt command.

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  3b2545d

• Read Python script and compile.

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  0814837

• Bug, change start symbol for Py_CompileString read from file.

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  ce0099f

Commits on Jan 5, 2023

• Debug, making mpi passing msg in the same function.

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  b1426c3

• Bug, not equal amount of MPI_Barrier in root and other ranks causes program not working in the same stage.

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  d30f102

Commits on Jan 6, 2023

• Removing debug msg.

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  059c034

Commits on Jan 8, 2023

• libyt.interactive_mode["func_body"] is now a function pool that has all the defined function. (Separate from g_func_status_list)

  Show description for 9aabf8d
  cindytsai

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  9aabf8d

• load_func_body cannot handle functors like callable class.

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  0cc9607

Commits on Jan 9, 2023

• Remove unused resource.

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  50ae1f5

• Grab functions and callables defined inside script loaded during runtime.

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  aac504b

• Define other command and make command static class method.

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  154a8a7

• Check if the file exist before loading it in load_script.

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  a9d09de

• Make define_command::run easier to read.

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  55e8d17

• merge define_command::is_exit into run.

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  31f2806

• Define %libyt func run/idle.

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  5a43e66

Commits on Jan 10, 2023

• Change m_Run from bool to int.

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  8cc9661

• When first import inline script, set function m_Run to -1, and yt_inline can force it to run.

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  753b48e

• Don't print error in func_status_list::print_summary.

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  d8f3296

• Update comments in print_summary.

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  cd831c4

• Implement define_command::get_func_status.

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  0253b5f

• Execute all new added functions.

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  1355928

• Print m_Run in print_summary.

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  06d2ad4

Commits on Jan 11, 2023

• Print m_Run in func_status_list::print_summary.

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  0bccc06

Commits on Jan 12, 2023

• Print function body in %libyt status func_name

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  91ea93e

• Remove string pointer.

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  c5d0b05

• Fix bug.

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  2a06241

Commits on Jan 13, 2023

• Run new added function with input arguments.

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  98c21e2

• Remove readline path, as it is already include in linux.

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  5333479

Commits on Jan 15, 2023

• Add sys.excepthook function after initializing libyt module.

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  932f3a6

• Define %libyt help, print help msg.

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  bc2ea04

• Moving checking libyt defined command into define_command class.

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  1c63d50

Commits on Jan 16, 2023

• Update help msg.

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  9765bb2

• Detect python code object callables.

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  6b797d8

• Update help msg.

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  8574257

• Rename load_func_body to load_file_func_body and create load_input_func_body.

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  9ff7482

• Move loading input func body into func_status_list class.

  Show description for 39d5668
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  39d5668

Commits on Jan 17, 2023

• Detecting callables from interactive prompt.

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  ce6b2a4

• change char *funcName to const char *fileName

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  31c8fd2

• Segmentation fault when input from prompt is not defined yet, the other thing works properly.

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  90e70c5

• Fix the bug, caused by source might be null.

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  f55ce35

• Detect callable after print errors.

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  b10006b

• Detect err msg caused by user hasn't done inputting.

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  e387995

Commits on Jan 18, 2023

• Add comments for known issues, and how to avoid it.

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  e43e0a2

• Change help msg.

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  fbbddf5

• Move checking err msg that indicates user not done yet to func_status_list::is_not_done_err_msg

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  98732bb

• Found the error, py_obj belongs to py_val, whose reference is taken after PyErr_Restore.

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  a2f160e

• Remove local_var cause they are unused.

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  455021a

• Update function definition from prompt input.

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  7811f16

• Remove unused var.

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  b0e1602

• Export file.

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  c26eef7

Commits on Jan 19, 2023

• Forgot to dereference.

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  0de8c43

• Make recording history and all exporting stuff under func_status_list class.

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  3f358d5

• Change history from stringstream to string.

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  729eaef

• Record to history if command runs successfully.

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  90e439e

Commits on Jan 23, 2023

• Flushing python output.

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  e6b8ad8

• Separate libyt interactive mode header.

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  85cb32e

Commits on Jan 24, 2023

• Update example

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  430ca56

• Make -DINTERACTIVE_MODE not a default.

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  f1c8a83

Commits on Jan 25, 2023

• More comments in example.cpp yt_interactive_mode

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  08d7499

• Update doc for interactive mode.

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  1bfe63d

• Bug, should run in inline script's namespace.

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  8c9ca5b

Commits on Jan 26, 2023

• Trying to set OMPI_MCA_osc when running in github action

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  2309789

• Add reminder if creating window failed in RMA.

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  a1f3ec0

• Update doc.

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  f5f8741

Commits on Jan 28, 2023

• Run yt_inline_argument in script's namespace.

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  9e6b878

• Run yt_inline in script's namespace.

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  2ff45f4

• Fix bug, not-yet-done error might have same type but with different err msg.

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  cindytsai

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  90bb032

• Update yt_inline* doc and change input para from char * to const char*.

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  084a87d

• Make yt_interactive_mode get const char *filename.

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  8799828

Commits on Jan 30, 2023

• Rename: swap_axes --> contiguous_in_x

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  3eae49f

• Rename: field_define_type --> field_type

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  aded8cc

Commits on Jan 31, 2023

• Remove: yt_field struct member derived_func_with_name.

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  4152c6e

• Rename: derived_func(int, long*, yt_data*) --> derived_func(const int, const long*, const char*, yt_data*)

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  7d0c706

Commits on Feb 1, 2023

• Rename: (yt_param_yt) num_species --> num_par_types

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  da9e6c3

• Rename: struct yt_species --> yt_par_type

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  639296d

• Rename: (yt_param_yt) species_list --> par_type_list

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  700b23e

• Rename: (yt_par_type, yt_particle) species_name --> par_type

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  aa3d9d0

• Rename (libyt python module): libyt.get_attr --> libyt.get_particle, libyt.get_attr_remote --> libyt.get_particle_remote

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  6ee9c46

Commits on Feb 2, 2023

• Rename: (yt_particle) get_attr(int, long*, char*, yt_array*) --> get_par_attr(const int, const long*, const char*, const char*, yt_array*)

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  aac0d36

• Rename: (yt_grid) particle_count_list --> par_count_list

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  committed
  0b67dfe

• Rename API: yt_interactive_mode --> yt_run_InteractiveMode

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  committed
  9f4e696

• Rename API: yt_init --> yt_initialize

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  bf81a67

• Rename API: yt_set_parameter --> yt_set_Parameters

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  c6cd0fc

• Rename API: yt_get_fieldsPtr --> yt_get_FieldsPtr

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  777e931

• Rename API: yt_get_particlesPtr --> yt_get_ParticlesPtr

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  0782346

• Rename API: yt_get_gridsPtr --> yt_get_GridsPtr

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  17bf246

• Rename API : yt_add_user_parameter_* --> yt_set_UserParameter*

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  2cc512a

• Rename API: yt_commit_grids --> yt_commit

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  d209578

• Rename API: yt_free_gridsPtr --> yt_free

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  6c2d458

• Rename API : yt_inline_argument --> yt_run_FunctionArguments

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  90d25e8

• Rename API: yt_inline --> yt_run_Function

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  6171d4e

• Spacing in libyt.h

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  e895e80

Commits on Feb 3, 2023

• Update doc.

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  62f63cb

• Unnecessary casting.

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  a277d40

• Fix typo.

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  29b1ffc

• Update comments in Makefile.

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  5ca0629

• Fix generate_density_data.cpp

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  committed
  5423f3a

• Change badge link.

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  cindytsai

  authored
  13be507

• cindytsai/libyt will use cindytsai/yt branch libyt-dev in github action.

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  91916a4

• Forget to change checkout branch name

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  c52d398

Commits on Feb 4, 2023

• Checking lifespan of variable in yt_param_libyt.

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  d4ba0e4

• Checking lifespan of variable in yt_param_libyt

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  c1c634d

Commits on Feb 5, 2023

• Consider lifetime of par_type and frontend. Change char *par_type to const char*

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  e50d0b3

• Doc for why not pass in const yt_param_yt* in yt_set_Parameters?

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  0ee04b9

• Make data type char* to const char* in yt_field, libyt only borrows them.

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  committed
  591bf3c

• Add notes for yt_field.

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  7cd966f

• Make data type char* to const char * in yt_particle, libyt only borrows their names.

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  0c3e2bb

• Update doc for setting fields and grids info.

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  c1ccca5

• Merge branch 'Rename'

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  846ee81

Commits on Feb 6, 2023

• Rename master to main.

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  0108670

• PR: Change github action badge to follow calab-ntu repo, and use libyt branch in cindytsai/yt.

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  942c421

Commits on Feb 7, 2023

• Remove warning: Change yt_rma_field/particle member initializer lists order.

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  306827a

• Remove warning: add () when assigning in while loop condition.

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  0e1bd74

• Remove warning: cast to according data type in comparison.

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  3d40b0b

• Use sys/stat.h to check file existence.

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  a0d76ca

• Use sys/stat.h to check file existence, and fix the logical bug.

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  cindytsai

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  4f3946e

• Update doc.

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  0270545

• Use g_myrank when setting exception hook in interactive mode.

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  60d2f60

Commits on Feb 8, 2023

• Find the BUG!!

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  committed
  2356e64

• Fix the bug: make func_status_list::run_func use PyRun_SimpleString.

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  committed
  fc4faf4

Commits on Feb 9, 2023

• Use += in std::string to avoid unnecessary new string created and binding.

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  committed
  e058451

• Remove todo: use emplace_back to avoid copying.

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